Web based tools for visualizing imaging data and development of XNATView, a zero footprint image viewer
نویسندگان
چکیده
Advances in web technologies now allow direct visualization of imaging data sets without necessitating the download of large file sets or the installation of software. This allows centralization of file storage and facilitates image review and analysis. XNATView is a light framework recently developed in our lab to visualize DICOM images stored in The Extensible Neuroimaging Archive Toolkit (XNAT). It consists of a PyXNAT-based framework to wrap around the REST application programming interface (API) and query the data in XNAT. XNATView was developed to simplify quality assurance, help organize imaging data, and facilitate data sharing for intra- and inter-laboratory collaborations. Its zero-footprint design allows the user to connect to XNAT from a web browser, navigate through projects, experiments, and subjects, and view DICOM images with accompanying metadata all within a single viewing instance.
منابع مشابه
Visualizing High Dynamic Range Images in a Web Browser
We present a technique for embedding high dynamic range (HDR) images with interactive exposure control in a web browser. Multiple exposures are encoded as a combination of several basis images, which are stacked together and displayed with different opacity values. The combination of such basis images yields the resulting exposure image. An intuitive interface based on JavaScript callback funct...
متن کاملRadiology, nuclear medicine, and medical imaging: a bibliometric study in Iran
Introduction: Nowadays, science mapping is considered an excellent technique for decision-makers to find solutions for problems in research planning and development. In this work, we aimed to depict a science map of “radiology, nuclear medicine, and medical imaging” in Iran. Methods: All publications indexed in Thomson Reuters Web of Science database in the fields mentioned above with at least...
متن کاملThe Open Anatomy Browser: A Collaborative Web-Based Viewer for Interoperable Anatomy Atlases
The Open Anatomy Browser (OABrowser) is an open source, web-based, zero-installation anatomy atlas viewer based on current web browser technologies and evolving anatomy atlas interoperability standards. OABrowser displays three-dimensional anatomical models, image cross-sections of labeled structures and source radiological imaging, and a text-based hierarchy of structures. The viewer includes ...
متن کاملSegmentation Assisted Object Distinction for Direct Volume Rendering
Ray Casting is a direct volume rendering technique for visualizing 3D arrays of sampled data. It has vital applications in medical and biological imaging. Nevertheless, it is inherently open to cluttered classification results. It suffers from overlapping transfer function values and lacks a sufficiently powerful voxel parsing mechanism for object distinction. In this work, we are proposing an ...
متن کاملThe Ontology Viewer: Facilitating Image Annotation with Ontology Terms in the CSIDx Imaging Database
In the life sciences data must be described unambiguously. We apply this principle in our multi-modal bio-imaging database in which images are stored together with comprehensive metadata. We use ontology terms to describe the semantic content of images. Ontologies are obtained from dedicated ontology repositories in the life sciences. For our users, the process of image annotation with ontology...
متن کامل